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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded … pipeline and enrichment metagenomics for terrestrial protists. These approaches enable novel insights into the …
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Microbiome Data Science Team
… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative … Science  356: 82-85 Ovchinnikov S. et al. (2017) Protein structure determination using metagenome sequence …
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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JGI Scientists Pen Genome Watch Articles
Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … As such, JGI is involved in a broad variety of genomics projects that relate to energy and the environment.” she … Sanger Institute.” Last year for the column, Woyke wrote about the research field’s move toward characterizing …
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Making a Lichen Together
… clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … now getting more scrutiny is how lichen is able to survive drying out to a potato-chip level of crispiness, only to …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the …
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Trent Northen
… programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed … After successful completion of the human genome project, Professor Dr. Rokhsar ’s team has continued to …
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Special Initiatives & Programs
Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … resources for genomic research and sequence-based science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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Metabolomics
JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, … crisis implemented by the UC team was the development of a protocol for injecting a solution that bolsters the immune …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the overwhelming majority of … associated greenhouse gas emissions as well as the need to protect these vital ecosystems. Peat bogs have two distinct … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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