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… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … What stressors do you think are affecting your results – could it be wind/light/nutrients.. any ideas? A:  … does not require that a plant be well characterized. Our results provide relative quantification of metabolites …

… mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … alike. Want to learn more about their experience? Watch the short video below. Video Transcript: Ti’Yanna Watson : Hi, … is Dr. Yi Zhai, and I’m currently working on the effect of plant root exudates in the rhizosphere and microbiome. …

The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 issue of Microbiome … probing (SIP) proved to vastly reduce labor and improve results. Applying this method to the study of a particular …

A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels are economically, … these analyses, we conducted further field experiments to determine the biochemical processes taking place during the …

JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … replicate faster and produce more progeny. This can provide short- and long-term impact on host metabolism in general, or on host …

… automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, … … BOOST … Synthesis Platform Lead … More Resources … Software Engineers in the Synthetic Biology Informatics Group …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional … Microbial Genomes group is focused on:  Developing state-of-the-art data processing and analysis pipelines for the …

Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is understanding the distributed and …