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Introducing New Members of the JGI User Executive Committee
… ecologist Gilbert at the University of California (UC) San Diego, being on the UEC is an opportunity to help … She aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is … review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been …
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Axel Visel
… computational and experimental sequence-based methods for elucidating the gene regulatory landscape of vertebrate … School of Natural Sciences at the University of California, Merced. Dr. Visel also served as JGI Interim Director from … tolerant CAM plants, Agave deserti and Agave tequilana. BMC Genomics  14, 563. May D, Blow MJ, Kaplan T, McCulley DJ, …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a … We work with people from all around the world. We work with start-ups and mature companies, as long as the data are not … provide scholarships or financial support, but they provide scientists with accepted proposals free access to their …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat from Cone Pool in Mono County, California, scientists have used sequencing methods for the first time … they’d likely have a hard time finding more. … The work conducted by the U.S. Department of Energy Joint Genome … JRS is supported by the NASA Astrobiology Institute Rock Powered Life grant. RS is supported by NSF grants …
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A Plant Root Atlas for Tracking Developmental Trajectories
… developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for … to plant tissues, also co-authored by Cole, started with Lab-funded research by then-Biosciences … Report Released Berkeley Lab News:  Five Berkeley Lab Scientists Receive Prestigious Five-Year Research Grant   … …
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Rex Malmstrom
Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group … active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a semi-automated stable isotope …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for … about their ability to adapt to changing environments, scientists have turned their attention to the pangenomes of … to their environments, two gene families—peroxidases and nucleotide-binding leucine-rich repeats (NLRs) —stood out for …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four … pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 exist in so many … at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team …
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Kjiersten Fagnan
Microbiome Data Collaborative where she leads infrastructure and user-centered design efforts. … PhD Applied … Big Data and Extreme-Scale Computing Conference . … UC CORO participant, 2021 Member of the Networking and … Prize, 2018 NERSC, CRD Petascale Postdoctoral Fellow … Education … About the JGI Chief Informatics Officer … Selected …
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Massie S. Ballon
… storyteller and social media manager for the JGI. She produced both text-based and multimedia stories that were then … and a graduate certificate in science communication from UC Santa Cruz. She is one of the Biosciences Area … & Accountability (IDEA) Chairs Council.   … 2020-2021, UC Women’s Initiative (North Cohort) UC Managing Implicit …
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Outreach Stories
Interested in reading more JGI intern and mentor success stories? Read more below. …
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