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… over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm … deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes … origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.  Science.  2012;336: 1715-1719. Berka RM …

… microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, T., Varghese, N., Roux, S. et … Mendota. Sci Data 11 , 966 (2024). https://doi.org/10.1038/s41597-024-03826-8 Nayfach, S., Roux, S., Seshadri, R. et … and archaea across Earth’s biomes. Nat Microbiol 4 , 1895–1906 (2019). https://doi.org/10.1038/s41564-019-0510-x …

… run things in like little Eppendorf tubes, or in 96, or 384 well plates. But then the fun really starts when you’re … ancestral sequence reconstruction”,  PNAS.  2023,  120, e2218248120. doi : 10.1073/pnas.2218248120 …

… of Energy operated under Contract No. DE-AC02-05CH11231. Work at the Molecular Foundry was supported by the … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. This research was developed with funding from the …

… Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood … (MIMAG) of bacteria and archaea. Nat Biotechnol 35(8): 725-731 (2017). Woyke T . & Rubin E.M. Evolution. Searching for …

… what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this …

… of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables systematic … natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. New voyages … sigma factor in Streptomyces griseus. Mol. Microbiol. 87, 1223-1236. PubMed …

… but we are open to a dialogue about a possible rationale. 8.  Q: Is there any way to get the most recent tree deployed … also described in Haridas S, Salamov A, & Grigoriev IV. (2018) Fungal Genome Annotation. In Methods in molecular biology … FilteredModels track you may want to search AllModels too. 31.  Is there a way to track the JGI ID changes as genomes …