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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, … JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of … published in the journal  Developmental Cell and provides a community resource that could help researchers track cell … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools … Institute (JGI), a DOE Office of Science User Facility. The sequences were then biochemically characterized by a team …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … diseases are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion … the enzymes that make the rumen such an efficient biomass-degrading environment and transfer that ability into …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s … well in the classroom. This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in … species; stricter filtering criteria provides a robust community dataset of improved quality; deep insights …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance … genomics data and has a strong reputation in the community,” said JGI Chief Informatics Officer Kjiersten … Oakridge National Laboratory Hackathon … From our partners …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established … All proposals undergo technical review by JGI staff as well as staff at the other … What happens after I submit? … User Programs …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI … The Chief Informatics Officer provides advice and strategic direction for …
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