Results

Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars
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Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution
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Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132
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A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so …
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Dispatches From JGI Interns
… cohort describe their deep dives into genomics, computational tools, and big data.  …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated …
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Tina Clarke
… joined the Lab in 2007 as the Sr. Human Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area management and supervisors to recommend solutions …
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