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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. … Laboratory (Berkeley Lab), as well as publicly available metagenomes, they analyzed both host and hitchhiker genomes …
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iPHoP: A Matchmaker for Phages and their Hosts
… are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic … This work was supported by the U.S. Department of Energy, Office of Science, Biological and Environmental …
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Training the Next Generation of Talent
… DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … transcribed instructions for building and maintaining cells through the use of deep-sequencing technologies. The internship program was born out …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – according to plan but unbeknownst to Ray and most of the rest of the 200-plus Zoom participants. While the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … Joint Genome Institute after serving as the Chief Operating Officer of the DOE Joint Bioenergy Institute and the Operations … The Deputy of Operations provides oversight and leadership of JGI …
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Six join FICUS program in 2026
… user facilities. Focus areas for these projects include biofuels, biomaterials and bioproducts; hydrobiogeochemistry; … interorganismal interactions; and novel applications of molecular techniques. The FICUS program is designed to … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common … nearly 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary …
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Party in the Rhizosphere
… rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … experience funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns … that I was working on was very difficult. I had a lot of errors, but I'm still working through those. And it's the …
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