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Brachypodium: 20 years as a grass biology model system; the way forward?
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… the power of genomics and molecular characterization from the JGI and EMSL in one proposed research project. In … Network (NEON) , and now the APS as well. Presentations from: Mary Lipton , EMSL: Introduction to the Facilities … to submit a FICUS proposal? A:  We work with people from all around the world and at different career level …
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Graduate Students Get Thesis Research Opportunity at the JGI
… result of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of … also serve as a mentor for another SCGSR awardee, Ian Rambo from Brett Baker’s lab at the University of Texas-Austin. … pressures on carbon cycling dynamics at the terrestrial-marine interface, which at a larger scale may be applicable …
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DAP-seq Drives Robust Mapping of Gene Regulation
… applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in … Complementing this, researchers have profiled over 160,000 high-quality single-nuclei transcriptomes, enabling the …
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Matt Blow
… R&D for production and user science. He received his Ph.D. from the Wellcome Trust Sanger Institute and Cambridge … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. … Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. Appl Environ Microbiol 85(18):e01210-19 Price …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers … in the SEED Scholars @ LBNL program,  with support from  the SEED program at UC Berkeley. Sally Liao came in … people in my group and my mentor looked over and was like, “why are you explaining phylogeny to people who have been …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … Increasingly, efforts like these will help grow and improve high-quality datasets, enabling global insights from …
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A One-Stop Shop for Analyzing Algal Genomes
… and what they do. Summary The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so …
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Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants
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Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
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Genome Sequence of Hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. cholerae▿
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Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date
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