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Party in the Rhizosphere
… rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome … which in turn can help to understand its impact on climate along earth history.” Marker genes for diverse methane …
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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … Merced, and Kevin Solomon of the University of Delaware. Along with the existing UEC members, their areas of study … On the UEC she intends to represent the user community by providing input on JGI policies and capabilities that …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for … and enabling future metagenomics studies.   … The sequencing project was funded by the U.S. Department of …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake … two supercomputers — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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JGI announces 2024 New Investigator portfolio
… is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel … under our Community Science Program . Below find a list of researchers whose proposals were accepted for 2024. … savviness of microbial ecosystems at the forest floor and along ocean shores. Their results could bring key insights …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … ocean known as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern … model of how marine microbial communities are affected by warming events. More time-series studies could help …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … Mouncey and program organizers Wang, Visel and Sindi, along with UC Merced Undergraduate Research Opportunities … Participation (CAMP) program, a statewide initiative funded by the National Science Foundation (NSF) that supports …
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The Fungi That Survive In Antarctica
… organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … DGR could mutate the virus’ tail fiber proteins, and thereby allow them to embrace different cells. Since that … datasets. They’ve discovered that DGRs are not only widespread, but also surprisingly active. In viruses, DGRs appear …
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