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Atif Shahab
… of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and enables efficient analysis and reporting of … University of New South Wales, Australia; MS in Computer Science, University of New South Wales, Australia …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … the DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond …
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Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes
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Getting to the Root of Plant‐Mediated Methane Emissions and Oxidation in a Thermokarst Bog
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were … able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their talks … support understanding of plants, microbes and environmental communities that have relevance for DOE’s bioenergy and …
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Forming Scientific Connections and Building Community
… and seven graduate students from UC Merced through their long standing internship program. In just two months, the … and also made new friends while working on their summer projects. Watch the short video here to see what they had to … Pugne-Andenoro : “The best part of the internship is the welcome and open community of the JGI. Everyone is excited to …
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DOE JGI Interns Share Their Summer Experiences
… Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time out in the field, work at the lab bench, and also do some computational analyses at their desks. As part of the DOE JGI’s … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and … by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) … Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European Research Council …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … The team set out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes …
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