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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites … The Secondary Metabolites Program targets the vast and underexplored reservoir of … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition … data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First and foremost, it is a BGC repository … U.S. Department of Energy Joint Genome Institute (https:// …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance … or CUDA – links to training materials will be sent out. The main benefit is professional growth and development for the … Oakridge National Laboratory Hackathon …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced in … identify the potential for methanogenesis, but questions remained as to if these microorganisms were actually engaging …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass … Scientific Program Product Description Deliverables Cycle Time FY25 Q1  … * Cycle times listed above are based on actual cycle times for projects completed over …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, … This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, …
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Complete genome sequence of Paenibacillus sp. strain JDR-2
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work … the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions … microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. … role in sequestering carbon and mitigating greenhouse gas emissions, and understanding how to improve soil health …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” … controls of nitrous oxide pulses in rewetted forest soils: An integrated -omic and isotopic approach” 12:39pm … Aerodyne Research Inc.: “Connecting above-ground greenhouse gas fluxes with subsurface nutrient cycling at an …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC … computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division. As a postdoc, her research focused on stable and accurate … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … that allow it to access nutrients easily from a variety of soils and has a high tolerance of extreme water conditions … summer droughts, these plants were better able to uptake soil water compared to the other plants. The team used QTL …
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