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Enlarging Windows into Understanding Gene Functions
… led by co-first authors Leo Baumgart and Juna Lee developed two approaches that build upon the DAP-seq technology … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent … This can provide insights into how they orchestrate sets of genes to execute similar functions. It can also …
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JGI Announces 2025 New Investigator Portfolio
Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research … who have not led any previously accepted proposals.  The New Investigator call , part of our  Community Science … capabilities such as metatranscriptomics and environmental DNA sequencing to explore microbial and plant interactions …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our … ecogenomics” community, the VEGA symposium provides networking opportunities and fosters discussions on how to …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… and Extension Center (KARE) in Parlier, Calif. They grew two sorghum cultivars under three watering conditions, and … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 …
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NeLLi — Symposium on New Lineages of Life
… and microbial symbiosis. Further, the symposium showcases cutting-edge experimental approaches, computational … of Symposium Goals Metagenomic and single-cell sequence data have provided a means to access novel microbial lineages, leading to a new appreciation for the extent of diversity. The …
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A data analysis and coordination center for the human microbiome project
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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DNA Sequence Analysis of an Inversion Hot Spot in Lobeliaceae Plastomes
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete … genomes of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and … years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The traditional …
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