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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for breeders and … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the … industry, and government organizations for three days of scientific presentation, interactive panel discussions, … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available … for users to publicly engage with each other, share annotations and collaborate on solutions.  Compared with …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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