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Genome sequence of the dark pink pigmented Listia bainesii microsymbiont Methylobacterium sp. WSM2598
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Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms
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Events
… Viral EcoGenomics & Applications (VEGA)  … The JGI is represented at conferences year round; find out where our researchers will …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … them. Despite advances in the years since this landmark publication, SOD continued to sweep through dozens of …
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Morphogenesis, starvation, and light responses in a mushroom-forming fungus revealed by long-read sequencing and extensive expression profiling
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Soil virus offers insight into maintaining microorganisms
… researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, including genes called auxiliary …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … the largest class of fungi, by lifestyles. The machine “learned” to identify data generated in part through … The work conducted by the U.S. Department of Energy Joint Genome …
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Comparative analysis of carboxysome shell proteins
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Extreme-Scale Many-against-Many Protein Similarity Search
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Mapping the Earth’s Hidden Fungal Kingdom
… Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial intelligence approaches for … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Learning representations of microbe–metabolite interactions
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2022 Progress Report
… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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