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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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How to Target a Microbial Needle within a Community Haystack
… the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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User Executive Committee Charter
… JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice … user meeting. The UEC also acts as a liaison to the user community and the broader scientific community and promotes … and may extend the overall duration of UEC membership for individuals serving in these roles. The three Chairs are …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … are shotgun (group) metagenomic sequencing and single-cell (individual) sequencing. Shotgun metagenomic sequencing takes … the majority of the cell’s genome is missing from the final assembly. So while researchers are confident all the DNA …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … The UEC represents the JGI user community and is responsible for providing input and advice … annual meeting. The UEC also acts as a liaison to the user community and the broader scientific community, and promotes …
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … the trust of our stakeholders. These stakeholders range from scientists to members of the public whose tax dollars … committees serve as ambassadors and role models for the community, demonstrating the highest standards of ethical …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … are genes out there that affect this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is … were generated, though the final analyses focused on 598 individuals. Schmutz and his team assembled and annotated …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, … analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of … a disease ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … U.S. Department of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office …
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Integrating Experimentation with Data
…                   General attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular … proposal process—enabling researchers worldwide to explore complex biological and environmental systems using advanced …
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