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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology … research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … Scripps Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also leads the …
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CSP Functional Genomics
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of … questions, please reach out to Christa Pennacchio, Project Management Office. For questions about the appropriateness …
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User Programs
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … JGI and the Molecular Foundry.  Submission Deadline Feb 19, 2026 (Proposals due 4/30/26) April 9, 2026  11:59pm PT  Sep 8, …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … Berkeley National Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial …
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The parallelism motifs of genomic data analysis
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Special Initiatives & Programs
… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … the minimum is 100 kb, and for metabolomics, at least 22 samples are required. If your proposed request falls below … that seeks to reduce U.S. gasoline consumption by 20% within 10 years through increased efficiency and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … expertise in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics … bioinformatics pipelines and a laboratory information management (LIMS) system. He previously led the NGS Software … AP, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology 36, …
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Natural Prodcast Episode 20: Brian Bachmann
… a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for … a good catalog of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put some of these … at the end: Henry Schares:  https://sim.confex.com/sim/np2023/meetingapp.cgi/Paper/46926 Jen Wurm:  …
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DOE Metrics
… capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational … Q2 is due to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down of the … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …
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