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A roadmap for equitable reuse of public microbiome data
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Natural Prodcast Episode 17: Cassandra Quave
… early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … of Georgia, along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … expertise in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
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MGM Workshop at Fisabio Summer School 2026
… sessions will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Rekha Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …
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Webinars on Offerings & Capabilities
… . You can find additional webinars covering how to use our data portals here.  …
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Kjiersten Fagnan
… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement … Dr. Fagnan was on the organizing committees for the ASCR Integrated Research Infrastructure - Architecture Blueprint … Click to learn more about how the JGI supports the entire data life cycle through resources including the JGI portals, …
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The Integrated Microbial Genome Resource of Analysis
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User Programs
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the …
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