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A roadmap for equitable reuse of public microbiome data
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2024 Progress Report
… bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … biological and environmental systems. We optimize our service to the community through responsibly managing our people … and resources.     Director's Perspective Over the last year, the U.S. Department of Energy Joint Genome Institute …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science After … from Colorado State University, the US Forest Service, New Mexico State University, the Environmental … Sciences Laboratory (proposal ID 49615), which is a DOE Office of Science User Facility. This facility is sponsored by …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… aquifer in 2007 to achieve this goal. In less than four years, parts of the shallow portions of the groundwater were nearly cleared of contamination. By 2020, the water was at … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC … Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez Gonzalez and mentor Hualan Liu, … of this internship, I hope to gain professional skills, advice skills, wet lab skills and overall connections. Theo …
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… SIP allows researchers to go beyond understanding which microbes are present in a sample, to generate data about … to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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Silicon-rich soil amendments impact microbial community composition and the composition of arsM bearing microbes
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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Stimulation of dissimilatory sulfate reduction in response to sulfate in microcosm incubations from two contrasting temperate peatlands near Ithaca, NY, USA.
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