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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … Lab). Using a single-cell screen, they can now identify microbes with specific functional characteristics. When they … those that are in low abundances—and their functional roles in their community. This study shows how the …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … In the ocean’s North Pacific Subtropical Gyre, microbes tend to stay localized at different depths. But …
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The Marchantia polymorpha pangenome reveals ancient mechanisms of plant adaptation to the environment
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under laboratory conditions, … planet’s microbial diversity is key to understanding the roles of microorganisms in regulating nutrient cycles, as …
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding … directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … SIP allows researchers to go beyond understanding which microbes are present in a sample, to generate data about … of Lawrence Livermore National Lab also played key roles in creating sessions where attendees could focus on …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … them on a regular basis. So they are full of terrestrial microbes. So they’re open ecosystems. They’re not sealed off …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in her ongoing CSP New …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to … team of researchers has identified the major metabolic roles of constituent microbes, publishing their findings in …
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