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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing … require input in the ~ 30 – 100ng range. Note that beyond quantity, input quality (i.e., presence of “intact” …
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JGI announces 2025 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows … to use them for engineering applications in support of advancing the bioeconomy. This year's project goals range …
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JGI Announces 2026 Functional Genomics Recipients
… Ritu Singh, Jiaqi Tan, Claire Willing Each year, the Joint Genome Institute (JGI) accepts proposals for … and omics capabilities to enhance understanding of gene and genome function. Understanding these functions gives … the tools to build engineering applications in support of advancing the bioeconomy. This year's projects span diverse …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Institute. The Impact The ability to accurately edit genomes (that is, repair gene mutations, and either delete …
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JGI@25: Studying Sorghum’s Survival Skills
… grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple grain eaten around the world, … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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How to Target a Microbial Needle within a Community Haystack
… and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … roles within their environments. Summary The traditional shotgun metagenomics approach to learning more about …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also …
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EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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Biotechnological advances in algae-based foods: applications in nutrition and microbiome health
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Microbial secondary metabolites: advancements to accelerate discovery towards application
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … to explain their work and its impacts at Berkeley Lab and beyond. Last summer, Wint hosted a virtual four-day data …
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