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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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Partners
… with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of … Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and …
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JGI announces 2024 New Investigator portfolio
The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and from PIs who have …
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JGI announces final round of 2022 Functional Genomics awardees
… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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2024 Progress Report
… complex biological and environmental systems. We optimize our service to the community through responsibly managing … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We …
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JGI announces 2023 CSP Functional Genomics awardees
… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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JGI announces second round of 2023 New Investigator awardees
Felipe Valdez-Nuñez  The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — aligned with DOE missions and from PIs who have …
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Computationally Classifying Fungal Lifestyles
… data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each … genomes were conducted as part of the 1000 Fungal Genomes Project supported by the JGI Community Sequencing Project # …
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JGI Announces 2025 New Investigator Portfolio
Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted …
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Fungal Friends or Foes in Plant Roots
… on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture … is an “excellent example” of how a 1000 Fungal Genomes project can enable studies of plant root microbiome and … roots: friends, enemies or frenemies? … Datasets … From our partners … Behind the Paper …
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David Goodstein
… in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type … 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of … eight JGI researchers on the 2023 Highly Cited Researchers list, and has appeared on the list since 2020. …
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