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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education department of Lawrence … the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP is a summer professional development … for the summer term (May through August) and selected projects will receive stipend and travel expenses, both for …
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Earth BioGenome Project: Sequencing life for the future of life
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A Collaboration to Improve Plant Genome Annotations Across Species
JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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A Grass Model to Help Improve Giant Miscanthus
The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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Virus-Microbe Interactions of Mud Island Mangroves
… user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The … his time with the JGI has shaped his post-graduate school plans. “The SCGSR gave me some great insight into my career …
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An Integrated Dataset to Understand Ecosystem Interaction
… trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by … metabolomic profiles — combined offers the global research community insights into how these trees adapt to different …
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Computationally Classifying Fungal Lifestyles
… in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human … Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer …
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Metabolomics Technology Group
Our lab is using mass spectrometry based metabolite … profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular … networks of environmental microbes and how they transform their environment. Research Team    … For further …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship … effect has your summer internship with the JGI had on your plans to pursue a STEM career?
 Doing the JGI internship has … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with the JGI …
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JGI Announces 2025 New Investigator Portfolio
Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our …
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Fungus Fuels Tree Growth
… (JGI), a DOE Office of Science User Facility, through its  Community Science Program in order to get  M. elongata and  … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker … 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science Foundation …
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