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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to … Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt … a greater understanding of terpene synthesis in plants will be important for alternative fuel development in … between the two species. The work was reported in the journal Heredity . In order to understand the gene …
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Natural Prodcast Episode 15: Katherine Duncan
… Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … in school. I wouldn’t say I was one of these people that wants to study oceanography and was fascinated by the oceans, … of North America. So then I came back and I worked on an EU project, the Scottish Association for Marine Science. And …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample … attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … a microbiome announcement that has been submitted to the journal  Environmental Microbiome with significant …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The … interactions. In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for …   The Science Hydrothermal vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. … (IMG/M) portal. The study,  published in the  Microbiome journal, broadens our understanding of the unique …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics … the resources for free. 8.  Q: What makes a successful project? A: Combination of: DOE mission relevance Science … devoted to algae (photosynthetic eukaryotes not including plants), so populated by algal genomes thus defined. We also …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific journal is the ultimate achievement. To get to this point … the primary author on this publication and drove the entire project, Visel explained. She continued working virtually …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology … biotechnological applications (e.g., new CRISPR-Cas variants and new CRISPR-Cas types) (Nature Communications 2017, …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … found in plant roots may have unknown roles. Some plants and fungi have mutually beneficial (e.g., mycorrhizal) … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … Terpenes are made via a tangled network of enzymes in plants. To better pinpoint the biosynthetic routes that … in five years, have come out of the JGI-supported project. “The JGI DNA Synthesis Science Program has been …
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