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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome … Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of … State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … election results, Ashley Shade and Jason Stajich completed their service on the UEC and we thank them for their advice. …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … genome sequence data generated over the past three decades, their study assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single snowflake on a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … by incorporating short sequences from infecting viruses and phages. In the event of a new infection, the microbes use …
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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … microbes evolve, they evolve to make molecules that improve their survival. Those molecules, over evolutionary time, … Episode Transcript … In this episode, Natural Prodcast talks to the legendary Prof William Fenical …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the … Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve … Basso, Heejung Cho Project:  Characterizing how resident phages shape their host phenotype Graduate interns Adeola …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. … the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … trained in synthetic chemistry as were you and then made their way into the field of natural products in some way, …
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Natural Prodcast
… Natural Prodcast is a “fireside chat”-style podcast about natural … JGI acts on its goals in — and builds out its capabilities for — secondary metabolism research, “Natural Prodcast” …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   … number of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, accessing these … often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters …
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