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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last … Engineering group lead, the Data Portal reflects a structural shift in data access. Users were previously limited … across the files that are submitted by each scientific program,” he said. “If each kingdom submits the same …
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JGI & KBase at PAG XXVII
… Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will … how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of talks … Promoters Regulating Poplar Drought Response 7:27 PM Highlights from Genome of Miscanthus 7:45 PM Transcriptome …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three … interactions in crops. He has been a PI or Co-PI on five user projects with the JGI, as well as served on review … the Department of Ecology, Evolution and Marine Biology at UCSB, where she leads a research group investigating the …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The … superphylum DPANN, named by a JGI-led team for the first five groups discovered: Diapherotrites, Parvarchaeota, … The work conducted by the US Department of Energy Joint Genome Institute, …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to … and operational themes and objectives for the next five years. It also includes more than 130 implementation … that support our scientific mission.” Strategic Plan Highlights:  Nutrient cycling theme. Advancing the JGI’s …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … how humans could do the same on an industrial scale to produce biofuels . Since one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of processing these …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early … plant genomics community. The project’s aim is to generate high-quality genome assemblies and annotations for 35 …
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JGI Announces 2026 Functional Genomics Recipients
… Tan, Claire Willing Each year, the Joint Genome Institute (JGI) accepts proposals for state-of-the-art functional genomics research from scientists who translate genomic … metabolize and mobilize rare earth elements and other high-value resources. Enabled by the capabilities and …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … the Deepwater Horizon oil rig explosion that dumped nearly five million barrels of light crude oil spilling into the … collaborations, Lab researchers working with the JGI successfully simulated how successive waves of microbial …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Events
…  Learn about meetings the JGI is hosting:   … New Lineages of Life (NeLLi) Symposium … Viral EcoGenomics & Applications (VEGA)  … The JGI is represented at conferences year round; find out where … will be presenting next. Go here to learn about upcoming user-focused webinars and workshops we're hosting. …
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Webinar: SIP technologies at EMSL and JGI
… Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage … isotope-related technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with … 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want …
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