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MycoCosm Tutorial
… multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor Grigoriev, Steven Mondo, Steven Ahrendt and Sajeet Haridas. …
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The Expanding Universe of Methane Metabolisms in Archaea
Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …
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From Textbook to Real World Applications
When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High … biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company … — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics … types of research without requiring them to build their own tools to do so.” The JGI/Truss team has talked to dozens of …
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UC Merced Interns Reflect on Their JGI Summer Projects
… students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission … far and wide — from implementing new data visualization tools, to using natural language processing techniques to … a fruitful experience for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual …
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PhycoCosm Tutorial
Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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Dispatches From JGI Interns
… cohort describe their deep dives into genomics, computational tools, and big data.  …
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JGI-UC Merced Interns Share Their 2021 Experiences
JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional … of Genus Roseovarius … Implementing a Scalable JGI-RQC Pipeline on the Cloud …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis … the research community, each offering specific features or tools. The U.S. Department of Energy (DOE) Joint Genome …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at Cornell, IBM, Utah State University, and … joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in …
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I-Min (Amy) Chen
Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. …
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MGM Workshop at Fisabio Summer School
Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences … related fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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