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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art … applications in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity … nine researchers accepted for 2024. Proposals are accepted year-round; the next deadline is Jan. 30, 2025. …
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Secondary Metabolites Program
… genomics, biodesign and metabolomics capabilities to identify, express and characterize bioactive secondary metabolite … Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma factor targets, and have expanded … Report Card toolkit (HERC-tk) to enable users to identify the best host to express their BGC(s). This is based on …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo … precise genome editing. This means that scientists can modify gene expression, or delete genes, all with the rapid …
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Exploring Phages at JGI
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Ben Bowen
… UC Berkeley, Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored Career Development awardee 1998-2003: NSF … U., Cadillo-Quiroz, H., Garcia-Pichel, F., & others (2015). Exometabolite niche partitioning among sympatric soil … Rubel, O., Prabhat, Mahoney, M., & Bowen, B. (2015). Identifying important ions and positions in mass spectrometry …
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JGI-UC Merced Interns Share Their 2021 Experiences
… returned to re-engage with their mentors from the previous year and continue working on their research project! The …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … JGI’s single cell genomics capabilities to assemble, identify, and characterize more than 200 microbial genomes that …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. …
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Marine Microbe Contains Multitudes
… Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected … namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial species. All SAR324 have very closely related …
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Emiley Eloe-Fadrosh
… from host-associated and environmental samples to identify and characterize genomic information from uncultivated … microbiome research community standards. Nat Microbiol . 8(5):751-753. Nayfach A, et al. 2021. A genomic catalogue of … NIH Training Program in Marine Biotechnology, 2005, 2006 Belkin Memorial Research Scholarship, UCSD …
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iPHoP: A Matchmaker for Phages and their Hosts
… to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of … Department of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The … As previously mentioned, it’s a method that’s been used for years but in most cases, the majority of the cell’s genome …
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