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… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers … Q: Is there any programmatic access to the portal? Or any data and metadata dumps available to download? A: We have …

… Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … number of users with a record output of products, making data easier to access and use, and by investing in the …

… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … which microbes are present in a sample, to generate data about which organisms are active, and which microbes … out the onerous SIP sample processing. Generating these datasets opens up the possibility of new insights across …

… gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary … various bioinformatic tools and comprehensive curated databases, including nomenclatural and genomic information as well as of important descriptive metadata about each strain. “This has been a very fruitful …

… Trained on environmental data, a new JGI tool more accurately facilitates microbial … of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly available data, GenomeOcean employs artificial intelligence for … Dataset on Secondary Metabolism Collaboratory …

… created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … geNomad is now accessible through the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to … of new viruses and plasmids quickly, even in massive datasets. geNomad employs two distinct approaches to …

… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …

… user-available API’s offer a space to not just store data, but for the community to discuss those data and make publicly-visible comments. Its purpose is to … studying actinobacteria to share information and data. The filamentous actinobacteria are of particular …

… of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … Canada at Summerland BC aimed to generate whole genome data of Olpidium. This required an enormous amount of effort … bacteria. Back in 2011 when these genome and transcriptome data were generated, bioinformatic tools for binning …

… Using the IMG/M data portal, researchers have identified a virus protein … soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint … JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a community resource for …

… of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …