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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a … determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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