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Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in the  Environmental Genomics group . Training the Search Tool Inoviruses are stealth agents that can enter and exit …
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …
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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … States. They also provided multiple access points to the information. The team harnessed a community-science program to … State University. A portion of this work was also performed under a subcontract from the River Corridor Science …
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices …
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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … computationally derived MAGs have been a revolutionary tool for microbiology, it's a call to balance,” added …
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