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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. … an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of … Facility located at Berkeley Laboratory, built off past experience in developing a secondary metabolites portal …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm … genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their … feedstock crops. Summary A plant is like an office building, its roots are akin to the ground floor lobby. …
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Ben Bowen
… spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … and optical devices 1997: NSF Interdisciplinary research experience for undergraduates fellowship … Raad, M., Rond, … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. …
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Three Join the JGI User Executive Committee
… (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest National … lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological … JGI Community Science Program (CSP) proposals. He  brings experience representative of the interests of the JGI’s …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have … National Laboratory – jointly the Nobel Prize in Chemistry with Emmanuelle Charpentier of the Max Planck Institute! … as having “a revolutionary impact on the life sciences.” Building upon CRISPR-Cas9 work, the Doudna lab at UC …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … of California Santa Barbara. So plants don’t break down without a fight, but it’s an important battle to fine-tune. … an assistant professor at the University of Delaware — is  building on this work to explore an enzymatic ‘toolbox’ of …
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Busting the Unbreakable Lignin
… shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to … anaerobic fungi could be used to effectively modify lignin without oxygen and make use of it, it would change the … component for the plant, like the brick-and-mortar of a building or the human skeleton. It’s more complex, and …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for … CSP  New Investigator call for proposals.  Tips: Contact us with your questions (jgi-jira[email protected]) Carefully … really important to show that your team has the necessary experience to handle the data, either by adding team members …
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Gut Fungi: Unexpected Source of Novel Chemicals
… and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … in their hunt for anaerobic fungi. By growing extracts without oxygen in ruminant fluid — which smells terrible … the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural products. The team then …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an … from the University of Duisburg-Essen (UDE), Germany with the aim of intensifying collaborations in the fields of … Storage & Distributed Resources Division at Berkeley Lab.  Building on the momentum of a Memorandum of Understanding …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with … each ancestor is called a subgenome. Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, …
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