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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Ray Turner Completes Last Tour of Lab Duty at JGI
… a close as this previously retired Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has … a close as this previously retired Naval Commander retires from Berkeley Lab. On June 24, in what was billed as a … a mask for Ray to wear and a red carnation lei flown in from Maui, care of the Admin Group’s Terri Bartolome. What …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… genomic information using minute quantities of DNA derived from individual environmental cells. The proof of principle … team reported the first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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Tracking the Origins of Methane-Producing Microbes
… user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 … collected. The team noticed some of the genomes diverged evolutionarily from other previously discovered genomes. …
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A Collaboration to Improve Plant Genome Annotations Across Species
… – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential …
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The JGI Data Portal: Improving User Experience
JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … experience and beginning work on the download experience from MycoCosm and PhycoCosm, with the intent of eventually …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Florida, they encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. In 2018, the US … Lab), embarked on a pilot project with biology students from Boca Raton Community High School in Palm Beach County, … the proper permits, to the refuge to collect soil samples from multiple locations. Back in the classroom, JGI …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Applying Viral Genomics Expertise to Understanding the Human Virome
… is led by a team of highly experienced investigators from institutions including the University of Maryland and … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse metagenomics samples. …
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Fungus Fuels Tree Growth
… of Florida collected forest samples of poplar and soil from Washington and Oregon. The cuttings included genotypes from the DOE BioEnergy Science Center (BESC), predecessor … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging … this symbiosis could improve the way soils store carbon from the atmosphere. For plants, boosting this relationship … spatial transcriptomics data captured molecular information from both plant cells and fungal cells. “Because this …
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