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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Styling for Safety: PPE, It’s the JGI Way
… Over the last few months, we found an increasing number of colleagues missing elements of the required PPE in the lab. To address this issue, we … to provide our colleagues with a visual representation of JGI PPE requirements. When working in the lab, it is … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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JGI announces first round of 2023 New Investigator awardees
… is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel … under our Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out as … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Katherine Louie
… JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … stable isotope probing (SIP) to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within …
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Kjiersten Fagnan
… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s … Methodologies workshops. In 2018, Dr. Fagnan was part of the Gordon Bell prizewinning team at the Supercomputing …
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Massie S. Ballon
… and outreach efforts, the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help cultivate the next generation of genomic research users, partners, and collaborators.  Ms. Ballon is a molecular biology-trained science communicator with extensive …
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … framework provided by these high quality reference genome sequences could help researchers better understand related …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … , is recognized as a mutualist, where both species of organism benefit from association, but was predicted to … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a … to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, a national …
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