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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had found other ways … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives … in 2004. The main object of her research was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont interplay using metagenomics. Taking on …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … The next step applied metagenomic binning (grouping sequencing reads by their likely organism of origin) … mitochondrial genomes from existing data without any new sequencing. In a parallel effort to search existing genome …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI Launches Latest Strategic Plan
… Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide … our near- and long-term goals. And, by the way, as far as sequencing goes, the JGI’s next petabase will likely be …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … therefore play a critical role in the global carbon cycle, and are of significant interest for their … methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the November 29, 2017 issue of … This research was supported by the National Science Foundation and the National Institutes of …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes assimilating … go from start to finish, i.e., QC to separation to library sequencing and assembly. Like others, our turnaround time …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at the … researcher who serves as their mentor. By contributing to projects that will help them build skills and tools, they … results not being the most promising. Going into the project, like, I kind of knew that my projects were …
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