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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … switchgrass is polyploid. This means it contains more than two copies of the genome , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to see what …
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Dispatches From JGI Interns
… research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives …
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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Pyrophosphate-free glycolysis in Clostridium thermocellum increases both thermodynamic driving force and ethanol titers
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … has been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. …
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