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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a … strengths into other plants. A brief timeline of sorghum projects at the JGI: 2009: JGI and collaborators use … genome and releases it to the community. 2014: GENCODE project begins. To support growing sorghum and other C4 …
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Fungal Friends or Foes in Plant Roots
… fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize … but not all plants and fungi can form such symbiotic partnerships. To learn more about these other plant-fungal … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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Workforce Development & Education Outreach
… to enter the STEM workforce by fostering an understanding of our role in advancing the energy and environmental … … The JGI and UC Merced have had a long-standing internship partnership that started in the summer of 2014. … Modeled on … Lab K-12 program, the JGI collaborates with Biotech Partners to host students transitioning from high school to …
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An Integrated Dataset to Understand Ecosystem Interaction
… relationship between poplar trees and their microbial partners. The Science To help better understand how … soil surrounding their roots (known as the rhizosphere), researchers hope this massive and integrated data set will … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. At these vents, and underwater volcanoes,  researchers studied microbial communities across five … found along mid-ocean ridges where tectonic plates pull apart. As those plates separate, seawater seeps through …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … each offering specific features or tools. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … viral, and metagenome data is currently underway. … U.S. Department of Energy Joint Genome Institute (https:// …
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At the Forefront of Terrestrial Virus Research
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the …
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Kjiersten Fagnan
… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan was part of the Gordon … team at the Supercomputing conference, SC’18, led by researchers at Oak Ridge National Laboratory. Dr. Fagnan has …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access … databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to …
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