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Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park
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Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … the world, expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of … State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … and initiation of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. As a UEC member, he aims to help the …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not … The work by Cavicchioli’s team sheds light on the range of archaeal symbiotic lifestyles found in the Antarctic lakes … of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … said. “We’ve done it in fungi, plants, bacteria and archaea. It works on basically anything we’ve tried.”  …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms … relationships than other algae, Auxenochlorella ’s reduced genomic complexity can accelerate the design-build-test … support from the Gordon and Betty Moore Foundation (to SSM) for the work on  A. symbiontica (9203). RJC was supported …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … Program lead, shone a spotlight on  ammonia oxidizing archaea and what we’re learning about their metabolism . And … address some of the most pressing challenges of our time. For more information, please visit  …
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FICUS-NERSC/KBASE
… Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. …
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