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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how … gain access to the Advanced Photon Source (APS) at Argonne National Laboratory when applying to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only … request a download.  When we have a calculation for automatically determining which datasets are unrestricted and which … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Webinar: Introducing the BioSANS capability
… Center for Structural Molecular Biology (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how … instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, EMSL’s …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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The IMG/M data management and analysis system v.7: content updates and new features.
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Fungal Friends or Foes in Plant Roots
… and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that … more about these other plant-fungal relationships, an international team led by graduate student Fantin Mesny in … Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by providing reference …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Lab) describe a computational pipeline that can specifically scan for those snowflakes, or RNA virus sequences. … together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus …
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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … to engage the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has … date, whichever comes first. For nearly 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy … that supports “an unprecedented assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  Kjiersten … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Offerings & Capabilities
… access to cutting-edge capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , DNA … phenotypic, metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. To …
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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A Social Science Experience
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