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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … here.” Mentor: Lorenzo Aureli Project: “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be … of polycistronic expression – in which two or more genes are encoded on a single molecule of mRNA – in two species of … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National …
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Jeremy Schmutz
… with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo … Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Leo Baumgart
… biology and microfluidics at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … developing single-nuclei sequencing methods to characterize gene regulation at the level of individual cells across … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, University of …
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Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa
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Fungal Friends or Foes in Plant Roots
… help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana … plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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Silver age of GOLD introduces new features
… OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … genomics analysis initiatives. GOLD not only curates sequencing projects carried out at the U.S. Department of … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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A Grass Model to Help Improve Giant Miscanthus
… The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year … Among the long-term aims for bioenergy feedstock crops are increasing their yields and improving their abilities to …
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