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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a DOE Office …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … a novel technique to access high-quality genomic information using minute quantities of DNA derived from … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics
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A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
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Phylogenetic and metagenomic analysis of Verrucomicrobia in former  agricultural grassland soil
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A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.
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AlloSHP: deconvoluting single homeologous polymorphism for phylogenetic analysis of allopolyploids
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of … scientific research from a broad range of disciplines. Three calls fall under the umbrella of our CSP: The … Genomics call is for projects that translate genomic information into biological function. The  New Investigator and …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … the composition of the environmental conditions can be estimated. In short, the complexity of nutrients, constraints, …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy … The researcher then submits a proposal for consideration in the next review cycle. All proposals undergo technical …
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