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Analysis of Brachypodium genomes with genome-wide optical maps
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Comparative Genomics Analysis of Trichoderma reesei Strains
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … address some of the most pressing challenges of our time. For more information, please visit  …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled …
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Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction
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Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis▿ †
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Matt Blow
… Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome … Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from … as a research scientist on projects to develop functional genomic technologies and to understand genome function in …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … I think it must’ve been about 2001, maybe, and so it was before smartphones and before laptops and everything. And I … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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