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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … work work it out 2.  Q(uestion): Do you publish the data sets the trees are based upon? A: This is still work in … getting these data on our system. If it’s not based on the gene model, that should be ok generally. We can work with …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a …
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Building on basic metagenomics with complementary technologies
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … species — dwarfing the diversity of plants. To put this evolutionary timescale in perspective, the genus Aspergillus … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … Energy, Earth and Environmental Education (E4) community-building workshop at the  2019 Association for Environmental … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … thought. Instead, it turns out this fern has been co-opting genes from bacteria. Schmutz was also involved in  a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The ancient Salicoid genome duplication event: A platform for reconstruction of de Novo gene evolution in Populus trichocarpa
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Multiple Origins and Rapid Evolution of Duplicated Mitochondrial Genes in Parthenogenetic Geckos (Heteronotia binoei; Squamata, Gekkonidae)
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse … are now much more powerful and flexible tools available for building high performance user interfaces and backend data …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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