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JGI@25: From Life at the Extremes to Editing Genomes
… collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By … machines. It has been applied in a variety of industries, from the health care to the financial sector — whether to … regulatory elements like promoters in front of this protein coding gene, like a structure.”  Think of verbs and nouns as …
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Gene Expression: From On-Off Switch to Dial
… area in the DNA, to determine which targets might benefit from an intermediate level of expression. Similar to the … under FP00005685. In addition, M.D. acknowledges funding from a National Defense Science and Engineering Graduate …
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DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus
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A Sorghum Pangenome Opens More Doors to Discovery
… Now, researchers have brought many reference genomes and sequences together at once, producing a pangenome resource … Danforth Plant Science Center. Collaborators benefitted from sequencing resources as part of the Community Science … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at … Institute (JGI), a DOE Office of Science User Facility. The sequences were then biochemically characterized by a team … to foreign genetic elements by incorporating short sequences from infecting viruses and phages. In the event of …
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JGI@25: Roots of a Mutualist Relationship
… In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature … genome sequence of a mycorrhizal fungus shifted the focus from looking at single organisms to applying a broader … on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual Meeting:   Francis …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Congratulations to the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much … A:  DNA modification detection can only be performed from “regular” PacBio, since the low-input protocol involves …
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Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates
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