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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact …   DAN: Got it.    NANCY: And this is really to complete the genomes, and I’m really thankful for this. It sort of goes …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a … of complex biological, earth, and environmental systems for energy and infrastructure security. In … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, …
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Giant viruses with an expanded complement of translation system components
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IMG/M: a data management and analysis system for metagenomes
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Applying Viral Genomics Expertise to Understanding the Human Virome
… expertise in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …   Learn more about our individual calls and other opportunities to work with the JGI …
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Igor Grigoriev
… in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He holds joint … National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He … and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … support, how much help can users expect for data analysis of the different omics analysis? Are users expected …
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Len Pennacchio
… 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint … Senior Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as … with their microbiomes. In addition, his group conducts comparative genomic research to understand the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome evolution …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and computational …
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