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The Integrated Microbial Genome Resource of Analysis
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as … PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have … 1 billion years of evolution in Kingdom Fungi — from phylogenetic relationships to evolution of genomic mechanisms — … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … than 5,000 data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet … a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP and … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have … refine and improve the process of finding novel Cas genes and CRISPR systems. The collaboration has resulted in … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our … in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he was among those selected by …
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Webinars on Offerings & Capabilities
Below are a list of webinars that can help you through the submission process by better understanding the capabilities and resources available for your … . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon …
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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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