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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … the JGI provides more insight into plant variation for future analysis and discovery. “We're building the data sets … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … this disease caused an estimated $4 billion in losses. Currently, ninety percent of Florida groves are infected. To … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … with the ETOP mission of providing JGI users with the most current technology and expertise in order to address … and automated binning methods also extends to harnessing future binning tools. DAS Tool is an example of how JGI …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional approaches. … can find the high-quality MAGs and use them to inform future analyses,” said José P. Faria, a KBase computational …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to completion. JGI does not only contribute to the body of current scientific knowledge, they are also equipping the …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … achieved thus far based on computational predictions, and future directions integrating computational and experimental … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … between-- so we just talked to Aaron Puri [coming up in a future episode!] and we were talking about signaling … that. JACKIE: So I guess when you get a new organism or a genome, let's say, and you're looking at clusters, is there …
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Large Direct Repeats Flank Genomic Rearrangements between a New Clinical Isolate of Francisella tularensis subsp. tularensis A1 and Schu S4
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my …
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