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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … modified versions of this protein domain. In an array of computational,  in vitro and  in vivo experiments, they …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the …
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ProDeGe: a computational protocol for fully automated decontamination of genomes
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Dan Rokhsar
… joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the … Publications … 2018 Marthella Foskett Brown Chair, Computational Biology, UC Berkeley 2012 Cotton Biotechnology … Director, Berkeley NHGRI Training Program in Genomics and Computational Biology …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new … diploid genome reference was visualized with GENESPACE, a computational tool for comparative genomics.   With a more … was supported by the University of Connecticut (UConn) Computational Biology Core, who also provided computational …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In one article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an … Roux outlines what’s been achieved thus far based on computational predictions, and future directions integrating …
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A Customizable Approach for the Enzymatic Production and Purification of Diterpenoid Natural Products.
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A Sorghum Pangenome Opens More Doors to Discovery
… of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource … “That was one of the most exciting things for me as a computational biologist. We're totally transforming how we … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Statement on the Use of Genomics Data
… (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to … Genome Project (HGP), and building upon the principles for open access in the field of genomics established in  … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant Science Center … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … to convert her biological observations into a practical computational application,” said Grigoriev, Wint’s other …
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