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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The emphasis is on … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … of working across field sampling and lab cultivation. “We need those lab studies to really understand what the … she added that phenazines are “keystone metabolites,” and by understanding what these metabolites do in nature and …
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How To Use Our Systems
… diverse scientific communities with large amounts of standardized high-quality data and metadata, and connect our … Each portal lists a contact, or you can reach out via the form on our website.   … Looking for BBTools? Find it here.  …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine … dozens of complex compounds, but stay largely dormant under standard conditions. As described in a recent issue of … to activate multiple chemical production pathways. By tracking gene activity and chemical output over time, the …
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Richard Fox
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Secrets of the Needles: What Microbes do on Conifer Leaves
… recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, which is known as the … surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … species and sites, reflecting ecological patterns shaped by both local conditions and the movement of microbes …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … webinar complements a  recent webinar co-hosted by the JGI and EMSL inviting researchers to apply for a … the Webinar: Q(uestion): Can I apply as a postdoc, or do I need a faculty member as PI? A(nswer: The FICUS program is …
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Effects of Polar Light Cycle on Microbial Food Web
… occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … Science Program. For most months each year, Ace Lake is covered in thick ice, with a combination of marine and … this portion of the lake provides everything the bacteria needs to survive. In December, January and February, the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … shotgun metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their … Amplification (PTA) that yielded more complete and evenly covered genomes when tested in human cells. To see if this …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … chemicals. To get to that point, industrial facilities will need large-scale approaches to processing plant biomass. … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used proteomics, genomics …
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Four Researchers Join JGI User Executive Committee
… State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … past decade in gene regulatory network projects supported by the CSP, and as part of microbiome research involving the … to the JGI’s vision and future success in meeting the needs of its broad user base and research interests.  Eisen …
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