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Sequencing Technologies
… significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They apply Lean Six Sigma practices to … and development approaches, testing various platforms to see what works best for applications. The team …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … recap of how plants, in general, work. KAROLINA:  We all know plants take up water through their roots. But for them … the JGI focuses on a group of plants called yuccas. If you know Joshua Tree, that’s an example of a yucca species. And …
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JGI@25: Roots of a Mutualist Relationship
… challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal … more multidisciplinary teams. The work also paved the way for a longstanding collaboration between researchers at the … there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … User Engagement Lead for the DOE Systems Biology Knowledgebase (KBase), as well as researchers from Pacific … gathered for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… that was used to clean up the toxic chemicals is commonly known as Enhanced Reductive Dechlorination (ERD.) It is … collected microbial samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were … the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team has also …
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Cataloging the Microbes that Manage the Health of River Systems
States. They also provided multiple access points to the information. The team harnessed a community-science program to … the process. They noted this may be the first publicly available, river-focused microbial resource that provides … are key components of watershed ecosystems, where rain or snow drain into such bodies of water before heading out to …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … (JGI), a DOE Office of Science User Facility, for publicly available metagenome data provided by the other study … lineages, and the other five only distantly related to known methanogens. With the help of this information, the …
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Plant-Microbial Interactions Group
… experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … responses … Selected Publications … Research Team Alumni … For further details, please reach out to …
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JGI on the 2020 Highly Cited Researchers List
… highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … Biotechnology that led to the release of 52,515 publicly-available microbial draft genomes generated from … the JGI through the  Community Science Program, and already available on the JGI’s  Integrated Microbial Genomes & …
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Filling in the Plant Tree of Life
… productive food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These … contribute to global biogeochemical cycles. Additional efforts in metabolic engineering and biocatalyst design will … Functional Genomics calls, here on our website.   See below for the full list of 2025 CSP Annual Call awardees. …
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The JGI announces 2024 awardees for our Community Science Program annual call
JGI is excited to announce the fifteen scientists selected for our 2024 Community Science Program Annual Call. “It’s … questions relevant to the DOE’s mission, and I look forward to seeing their outcomes.” The annual CSP call is … Functional Genomics calls, here on our website . See below for the full list of 2024 CSP Annual Call awardees. …
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