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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the … there is a strong chemical and salinity gradient — and green sulfur bacteria,  Chlorobium , blooms. The specific … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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Natural Prodcast Episode 8: Eric Schmidt
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for … so I’m hoping we can follow up with him again as the project progresses! If you’re interested in RiPPs, I’ll put … And so I feel like for the most part, that area is taken care of.  DAN:  We haven’t had anybody talk too much about …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … (DP150100244) and the Australian Antarctic Science program (project 4031). The work in the Hallam Lab was performed … V.I.R. and S.R.S. acknowledge support for the IsoGenie Project (samples and metadata from Stordalen Mire, Sweden) …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, … team, along with local community college students Lea Green and Natalie Chapman, headed to their lab in Mulford …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and … 590: 438-444. Mamidi, S et al. 2020. A genome resource for green millet Setaria viridis enables discovery of …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human … release of the high quality reference genome sequence of green millet ( Setaria viridis ). The team of researchers at …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding …
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Natural Prodcast Episode 23: Aaron Puri
… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … at the University of Washington there’s a guy named Peter Greenberg , and in the medical school in the Department of …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have … and published in the journal Science . At the time, the project was co-led by Daniel Rokhsar, head of the JGI’s … cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome launched over a dozen of new …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the … why it’s so hard to succeed, and we talk about an ongoing project I’ve been working with him on as an exploration into … be introducing my new partner, who, if you’re listening carefully, you might already know about. More on that later. …
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