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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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I-Min (Amy) Chen
… one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen is … of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … one-third of human-created methane emissions actually come from livestock — specifically, from the methane-making … 2010, the JGI has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through …
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Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … at industrial scales. “Cell-free systems have been really powerful at finding ways to accelerate bio-design and …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces … When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a novel … microbial enzymes, which could have a plethora of potential applications to industrial processes. Summary JGI …
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A Natural Mechanism Can Turbocharge Viral Evolution
… how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … harness them as molecular tools for research and industry applications. Summary In their recently published Nature … and viral genomes, as well as genomes sampled all at once from the same environment, called metagenomes. Why? Simon …
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User Support
Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate … specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New Investigator call for … 21, 2020, will be included in the next review. Q&A from the Webinar: Q(uestion): Can people can mix and match … institution, as there are some that won’t allow this. It’s really important to show that your team has the necessary …
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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … discovery of new genes with important biotechnological applications (e.g., new CRISPR-Cas variants and new … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in …
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Comparative Genomic Analysis of the Endosymbionts of Herbivorous Insects Reveals Eco-Environmental Adaptations: Biotechnology Applications
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Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample
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